B. Oshlack: search on Z-Library

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1

A scaling normalization method for differential expression analysis of RNA-seq data

Robinson, Mark D, Oshlack, Alicia

Journal:

Year:

2010

Language:

english

File:

PDF, 655 KB

english, 2010

2

Aqueous pseudolatex of zein for film coating of solid dosage forms

Patrick B. O'Donnell, Chuanbin Wu, Jijun Wang, Lisa Wang, Benjamin Oshlack, Mark Chasin, Roland Bodmeier, James W. McGinity

Journal:

European Journal of Pharmaceutics and Biopharmaceutics

Year:

1997

Language:

english

File:

PDF, 772 KB

english, 1997

3

The United States experience with oral controlled-release morphine (MS contin tablets).parts i and ii. review of nine dose titration studies and clinical pharmacology of 15-mg, 30-mg, 60-mg, and 100-mg tablet strengths in normal subjects

Robert F. Kaiko, Robert P. Grandy, Benjamin Oshlack, Joseph Pav, Joseph Horodniak, Gordon Thomas, Ellen Ingber, Paul D. Goldenheim

Journal:

Year:

1989

Language:

english

File:

PDF, 646 KB

english, 1989

4

Identification, Expression, and Regulation of Anti-Mullerian Hormone Type-II Receptor in the Embryonic Chicken Gonad

Cutting, A. D., Ayers, K., Davidson, N., Oshlack, A., Doran, T., Sinclair, A. H., Tizard, M., Smith, C. A.

Journal:

Biology of Reproduction

Year:

2014

Language:

english

File:

PDF, 3.36 MB

english, 2014

5

Kidney micro-organoids in suspension culture as a scalable source of human pluripotent stem cell-derived kidney cells

Kumar, Santhosh V., Er, Pei X., Lawlor, Kynan T., Motazedian, Ali, Scurr, Michelle, Ghobrial, Irene, Combes, Alexander N., Zappia, Luke, Oshlack, Alicia, Stanley, Edouard G., Little, Melissa H.

Journal:

Development (The Company of Biologists)

Year:

2019

Language:

english

File:

PDF, 7.91 MB

english, 2019

6

Natural selection on gene expression

Yoav Gilad, Alicia Oshlack, Scott A. Rifkin

Journal:

Trends in Genetics

Year:

2006

Language:

english

File:

PDF, 132 KB

english, 2006

7

Normalization of boutique two-color microarrays with a high proportion of differentially expressed probes

Alicia Oshlack, Dianne Emslie, Lynn M Corcoran, Gordon K Smyth

Journal:

Year:

2007

Language:

english

File:

PDF, 3.45 MB

english, 2007

8

A clinically driven variant prioritization framework outperforms purely computational approaches for the diagnostic analysis of singleton WES data

Stark, Zornitza, Dashnow, Harriet, Lunke, Sebastian, Tan, Tiong Y, Yeung, Alison, Sadedin, Simon, Thorne, Natalie, Macciocca, Ivan, Gaff, Clara, Oshlack, Alicia, White, Susan M, James, Paul A

Journal:

European Journal of Human Genetics

Year:

2017

Language:

english

File:

PDF, 251 KB

english, 2017

9

Kidney micro-organoids in suspension culture as a scalable source of human pluripotent stem cell-derived kidney cells

Kumar, Santhosh V., Er, Pei X., Lawlor, Kynan T., Motazedian, Ali, Scurr, Michelle, Ghobrial, Irene, Combes, Alexander N., Zappia, Luke, Oshlack, Alicia, Stanley, Edouard G., Little, Melissa H.

Journal:

Development (The Company of Biologists)

Year:

2019

File:

PDF, 7.91 MB

2019

10

Characterization and validation of a pharmacokinetic model for controlled-release oxycodone

JAAP W. MANDEMA, ROBERT F. KAIKO, BENJAMIN OSHLACK, ROBERT F. REDER, DONALD R. STANSKI

Journal:

British Journal of Clinical Pharmacology

Year:

1996

Language:

english

File:

PDF, 451 KB

english, 1996

11

The spectral energy distribution of PKS 2004–447: a compact steep-spectrum source and possible radio-loud narrow-line Seyfert 1 galaxy

L. C. Gallo, P. G. Edwards, E. Ferrero, J. Kataoka, D. R. Lewis, S. P. Ellingsen, Z. Misanovic, W. F. Welsh, M. Whiting, Th. Boller, W. Brinkmann, J. Greenhill, A. Oshlack

Journal:

Monthly Notices of the Royal Astronomical Society

Year:

2006

Language:

english

File:

PDF, 306 KB

english, 2006

12

Expression profiling in primates reveals a rapid evolution of human transcription factors

Gilad, Yoav, Oshlack, Alicia, Smyth, Gordon K., Speed, Terence P., White, Kevin P.

Journal:

Year:

2006

Language:

english

File:

PDF, 207 KB

english, 2006

13

Bioavailability comparison of three controlled release codeine formulations vs. conventional oral codeine

R. Grandy, B. Oshlack, G. Thomas, N. Healv, R. Kaiko, P. Goldenheim

Journal:

Journal of Pain and Symptom Management

Year:

1988

Language:

english

File:

PDF, 148 KB

english, 1988

14

Array-Based Gene Discovery with Three Unrelated Subjects Shows SCARB2/LIMP-2 Deficiency Causes Myoclonus Epilepsy and Glomerulosclerosis

Samuel F. Berkovic, Leanne M. Dibbens, Alicia Oshlack, Jeremy D. Silver, Marina Katerelos, Danya F. Vears, Renate Lüllmann-Rauch, Judith Blanz, Ke Wei Zhang, Jim Stankovich, Renate M. Kalnins, John P.

Journal:

The American Journal of Human Genetics

Year:

2008

Language:

english

File:

PDF, 1.29 MB

english, 2008

15

Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis

Andrew J Holloway, Alicia Oshlack, Dileepa S Diyagama, David DL Bowtell, Gordon K Smyth

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 850 KB

english, 2006

16

Steady-state bioavailability of controlled-release oxycodone in normal subjects

Robert F. Reder, Benjamin Oshlack, Jahanara B. Miotto, David D. Benziger, Robert F. Kaiko

Journal:

Clinical Therapeutics

Year:

1996

Language:

english

File:

PDF, 687 KB

english, 1996

17

SWAN: Subset-quantile Within Array Normalization for Illumina Infinium HumanMethylation450 BeadChips

Jovana Makismovic, Lavinia Gordon, Alicia Oshlack

Journal:

Year:

2012

Language:

english

File:

PDF, 462 KB

english, 2012

18

Transcript length bias in RNA-seq data confounds systems biology

Alicia Oshlack, Matthew J Wakefield

Journal:

Year:

2009

Language:

english

File:

PDF, 840 KB

english, 2009

19

A 10-step guide to party conversation for bioinformaticians

Oshlack, Alicia

Journal:

Year:

2013

Language:

english

File:

PDF, 643 KB

english, 2013

20

From RNA-seq reads to differential expression results

Oshlack, Alicia, Robinson, Mark D, Young, Matthew D

Journal:

Year:

2010

Language:

english

File:

PDF, 435 KB

english, 2010

21

Expression discordance of monozygotic twins at birth: Effect of intrauterine environment and a possible mechanism for fetal programming

Gordon, Lavinia, Joo, Ji-Hoon E, Andronikos, Roberta, Ollikainen, Miina, Wallace, Euan M, Umstad, Mark P, Permezel, Michael, Oshlack, Alicia, Morley, Ruth, Carlin, John B, Saffery, Richard, Smyth, Gor

Journal:

Year:

2011

Language:

english

File:

PDF, 3.41 MB

english, 2011

22

Gene ontology analysis for RNA-seq: accounting for selection bias

Matthew D Young, Matthew J Wakefield, Gordon K Smyth, Alicia Oshlack

Journal:

Year:

2010

Language:

english

File:

PDF, 2.29 MB

english, 2010

23

Condensin I associates with structural and gene regulatory regions in vertebrate chromosomes

Kim, Ji Hun, Zhang, Tao, Wong, Nicholas C., Davidson, Nadia, Maksimovic, Jovana, Oshlack, Alicia, Earnshaw, William C., Kalitsis, Paul, Hudson, Damien F.

Journal:

Nature Communications

Year:

2013

Language:

english

File:

PDF, 2.43 MB

english, 2013

24

PW287 Identification of key microRNAs involved in regulation of ovine fetal heart development

Krauss, Ramona, Phipson, Belinda, Gupta, Nikita, Smolich, Joseph, Oshlack, Alicia, Cheung, Michael, Pepe, Salvatore

Journal:

Year:

2014

Language:

english

File:

PDF, 63 KB

english, 2014

25

Analysis of epigenetic changes in survivors of preterm birth reveals the effect of gestational age and evidence for a long term legacy

Mark N Cruickshank,Alicia Oshlack,Christiane Theda,Peter G Davis…

Journal:

Genome Medicine

Year:

2013

Language:

english

File:

PDF, 1.36 MB

english, 2013

26

Corset: enabling differential gene expression analysis forde novoassembled transcriptomes

Nadia M Davidson,Alicia Oshlack

Journal:

Year:

2014

Language:

english

File:

PDF, 1.46 MB

english, 2014

27

DiffVar: a new method for detecting differential variability with application to methylation in cancer and aging

Phipson, Belinda, Oshlack, Alicia

Journal:

Year:

2014

Language:

english

File:

PDF, 1.04 MB

english, 2014

28

Cell-Type-Specific Transcriptional Profiles of the Dimorphic Pathogen Penicillium marneffei Reflect Distinct Reproductive, Morphological, and Environmental Demands

Pasricha, S., Payne, M., Canovas, D., Pase, L., Ngaosuwankul, N., Beard, S., Oshlack, A., Smyth, G. K., Chaiyaroj, S. C., Boyce, K. J., Andrianopoulos, A.

Journal:

G3 Genes|Genome|Genetics

Year:

2013

Language:

english

File:

PDF, 2.46 MB

english, 2013

29

miRNA-Seq normalization comparisons need improvement

Zhou, X., Oshlack, A., Robinson, M. D.

Journal:

Year:

2013

Language:

english

File:

PDF, 52 KB

english, 2013

30

Segmental Duplications Contribute to Gene Expression Differences Between Humans and Chimpanzees

Blekhman, R., Oshlack, A., Gilad, Y.

Journal:

Year:

2009

Language:

english

File:

PDF, 1.00 MB

english, 2009

31

Purification and Transcriptomic Analysis of Mouse Fetal Leydig Cells Reveals Candidate Genes for Specification of Gonadal Steroidogenic Cells

McClelland, K. S., Bell, K., Larney, C., Harley, V. R., Sinclair, A. H., Oshlack, A., Koopman, P., Bowles, J.

Journal:

Biology of Reproduction

Year:

2015

Language:

english

File:

PDF, 9.88 MB

english, 2015

32

ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity

Young, M. D., Willson, T. A., Wakefield, M. J., Trounson, E., Hilton, D. J., Blewitt, M. E., Oshlack, A., Majewski, I. J.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 3.08 MB

english, 2011

33

A comparison of background correction methods for two-colour microarrays

Ritchie, M. E., Silver, J., Oshlack, A., Holmes, M., Diyagama, D., Holloway, A., Smyth, G. K.

Journal:

Year:

2007

Language:

english

File:

PDF, 870 KB

english, 2007

34

Removing unwanted variation in a differential methylation analysis of Illumina HumanMethylation450 array data

Maksimovic, J., Gagnon-Bartsch, J. A., Speed, T. P., Oshlack, A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 476 KB

english, 2015

35

Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips

Shi, W., Oshlack, A., Smyth, G. K.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 226 KB

english, 2010

36

Susceptibility to Acute Rheumatic Fever Based on Differential Expression of Genes Involved in Cytotoxicity, Chemotaxis, and Apoptosis

Bryant, P. A., Smyth, G. K., Gooding, T., Oshlack, A., Harrington, Z., Currie, B., Carapetis, J. R., Robins-Browne, R., Curtis, N., Baumler, A. J.

Journal:

Infection and Immunity

Year:

2014

Language:

english

File:

PDF, 1.07 MB

english, 2014

37

Using DNA microarrays to study gene expression in closely related species

Oshlack, A., Chabot, A. E., Smyth, G. K., Gilad, Y.

Journal:

Year:

2007

Language:

english

File:

PDF, 257 KB

english, 2007

38

A comparison of control samples for ChIP-seq of histone modifications

Flensburg, Christoffer, Kinkel, Sarah A., Keniry, Andrew, Blewitt, Marnie E., Oshlack, Alicia

Journal:

Frontiers in Genetics

Year:

2014

Language:

english

File:

PDF, 1.99 MB

english, 2014

39

Bpipe: a tool for running and managing bioinformatics pipelines

Sadedin, S. P., Pope, B., Oshlack, A.

Journal:

Year:

2012

Language:

english

File:

PDF, 67 KB

english, 2012

40

Gene Regulation in Primates Evolves under Tissue-Specific Selection Pressures

Blekhman, Ran, Oshlack, Alicia, Chabot, Adrien E., Smyth, Gordon K., Gilad, Yoav, McVean, Gil

Journal:

Year:

2008

Language:

english

File:

PDF, 1.18 MB

english, 2008

41

missMethyl: an R package for analyzing data from Illumina’s HumanMethylation450 platform: Fig. 1.

Phipson, Belinda, Maksimovic, Jovana, Oshlack, Alicia

Journal:

Year:

2015

Language:

english

File:

PDF, 142 KB

english, 2015

42

Near Infrared Micro-variability of Radio-loud Quasars

Whiting, Matthew, Oshlack, Alicia, Webster, Rachel

Journal:

Publications of the Astronomical Society of Australia

Year:

2002

Language:

english

File:

PDF, 179 KB

english, 2002

43

Whole exome sequencing in systemic juvenile idiopathic arthritis

Moghaddas, Fiona, De Nardo, Dominic, Baker, Paul, Gordon, Lavinia, Sadedin, Simon, Oshlack, Alicia, Akikusa, Jonathan, Allen, Roger, Munro, Jane, Ellis, Justine, Masters, Seth

Journal:

Year:

2016

Language:

english

File:

PDF, 51 KB

english, 2016

44

Identification of candidate gonadal sex differentiation genes in the chicken embryo using RNA-seq

Ayers, Katie L., Lambeth, Luke S., Davidson, Nadia M., Sinclair, Andrew H., Oshlack, Alicia, Smith, Craig A.

Journal:

Year:

2015

Language:

english

File:

PDF, 3.17 MB

english, 2015

45

JAFFA: High sensitivity transcriptome-focused fusion gene detection

Davidson, Nadia M, Majewski, Ian J, Oshlack, Alicia

Journal:

Genome Medicine

Year:

2015

Language:

english

File:

PDF, 1.03 MB

english, 2015

46

Erratum to: ‘Identification of candidate gonadal sex differentiation genes in the chicken embryo using RNA-seq’

Ayers, Katie L., Lambeth, Luke S., Davidson, Nadia M., Sinclair, Andrew H., Oshlack, Alicia, Smith, Craig A.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.12 MB

english, 2016

47

PHARMACOKINETIC MODEL FOR A NEW ORAL CONTROLLED RELEASE FORMULATION OF OXYCODONE

Mandema, J. W., Kaiko, R. K., Oshlack, B., Reder, R. F., Stanski, D. R.

Journal:

Year:

1994

File:

PDF, 101 KB

1994

48

A Very Radio Loud Narrow‐Line Seyfert 1: PKS 2004−447

Oshlack, A. Y. K. N., Webster, R. L., Whiting, M. T.

Journal:

The Astrophysical Journal

Year:

2001

Language:

english

File:

PDF, 130 KB

english, 2001

49

Genotyping microsatellites in next-generation sequencing data

Dashnow, Harriet, Tan, Susan, Das, Debjani, Easteal, Simon, Oshlack, Alicia

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 241 KB

english, 2015

50

Functionally distinct roles foar different miR-155 expression levels through contrasting effects on gene expression, in acute myeloid leukemia

Narayan, N, Morenos, L, Phipson, B, Willis, S N, Brumatti, G, Eggers, S, Lalaoui, N, Brown, L M, Kosasih, H J, Bartolo, R C, Zhou, L, Catchpoole, D, Saffery, R, Oshlack, A, Goodall, G J, Ekert, P G

Journal:

Year:

2016

Language:

english

File:

PDF, 80.90 MB

english, 2016

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